Whole-Genome Analysis of KPC-Producing Klebsiella Pneumoniae Isolates from Hospital Acquired Post-Neurosurgical Meningitis
Mingyue Sun, Weiqiang Xiao and Qingxia Xu*
Department of Clinical Laboratory, Affiliated Cancer Hospital of Zhengzhou University and Henan Cancer Hospital, Zhengzhou, Henan, People's Republic of China
*Corresponding Author: Qingxia Xu, Department of Clinical Laboratory, Affiliated Cancer Hospital of Zhengzhou University and Henan Cancer Hospital, Zhengzhou, Henan, People's Republic of China.
Received:
December 14, 2021; Published: January 31, 2022
Abstract
Background: Nosocomial bacterial infections from carbapenem-resistant Klebsiella pneumoniae (CRKP) are associated with high mortality in neurosurgical patients. This study examined the post-neurosurgical meningitis outbreak caused by CRKP of patients with nervous system tumours, and analysed the molecular characteristics of the causative strain.
Methods: Neurosurgical cancer patients with meningitis caused by CRKP between 2017-2019 were retrospectively analysed. Identification of strains and antimicrobial susceptibilities was conducted using BD Phoenix-100, 16S rRNA gene sequencing and broth microdilution. Multilocus sequence typing (MLST) and pulsed-field gel electrophoresis (PFGE) were used to identify the subtypes of K. pneumoniae. The genotype correlation, resistance genes and plasmid of isolates were assessed by whole-genome sequencing (WGS).
Results: Isolates were resistant to almost all of the tested antimicrobial agents except polymyxin and tigecycline. The PFGE and MLST revealed all isolates were the same strain - ST11-while WGS phylogenetic analysis indicated they were closely related. The isolates harboured blaKPC-2 and an IncFII-type plasmid; the blaKPC-2 gene had a similar genetic environment across isolates.
Conclusions: The results of molecular analysis showed that ST11 and IncFII-type plasmid in CRKP have close correlations and indicate a long-term retrospective genomic study throughout the hospital for KPC-producing K. pneumoniae is necessary.
Key words: K. pneumoniae; Meningitis; Whole-Genome Sequencing; Incfii-Type Plasmid
References
- A Tsitsopoulos PP., et al. “Nosocomial bloodstream infections in neurosurgery: a 10-year analysis in a center with high antimicrobial drug-resistance prevalence”. Acta Neurochirurgica 9 (2016): 1647-1654.
- Kourbeti IS., et al. “Infections in patients with traumatic brain injury who undergo neurosurgery”. British Journal of Neurosurgery1 (2011): 9-15.
- Orsi GB., et al. “Hospital-acquired infection surveillance in a neurosurgical intensive care unit”. The Journal of Hospital Infection 1 (2006): 23-29.
- Dziedzic T., et al. “Nosocomial infections and immunity: lesson from brain-injured patients”. Critical Care 4 (2004): 266-270.
- Gocmez C., et al. “Evaluation of risk factors affecting hospital-acquired infections in the neurosurgery intensive care unit”. The International Journal of Neuroscience 7 (2014): 503-508.
- Laupland KB., et al. “Population-based assessment of intensive care unit-acquired bloodstream infections in adults: Incidence, risk factors, and associated mortality rate”. Critical Care Medicine 11 (2002): 2462-2467.
- Sablotzki A., et al. “Dysregulation of immune response following neurosurgical operations”. Acta Anaesthesiologica Scandinavica 1 (2000): 82-87.
- Tsitsopoulos PP., et al. “A 5-year epidemiological study of nosocomial bloodstream infections in a neurosurgery department”. Infection Control and Hospital Epidemiology 4 (2010): 414-417.
- Hasbun R., et al. “Epidemiology of Meningitis and Encephalitis in the United States, 2011-2014”. Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America 3 (2017): 359-363.
- Pereira PS., et al. “Update of the molecular epidemiology of KPC-2-producing Klebsiella pneumoniae in Brazil: spread of clonal complex 11 (ST11, ST437 and ST340)”. The Journal of Antimicrobial Chemotherapy 2 (2013): 312-316.
- Tangden T and Giske CG. “Global dissemination of extensively drug-resistant carbapenemase-producing Enterobacteriaceae: clinical perspectives on detection, treatment and infection control”. Journal of Internal Medicine5 (2015): 501-512.
- Almeida SM., et al. “Nosocomial meningitis caused by Klebsiella pneumoniae producing carbapenemase, with initial cerebrospinal fluid minimal inflammatory response”. Arquivos de Neuro-Psiquiatria 5 (2014): 398-399.
- Holyk A., et al. “Ceftazidime/avibactam use for carbapenem-resistant Klebsiella pneumoniae meningitis: a case report”. The Journal of Antimicrobial Chemotherapy 1 (2018): 254-256.
- Li R., et al. “Emergence of a novel conjugative hybrid virulence multidrug-resistant plasmid in extensively drug-resistant Klebsiella pneumoniae ST15”. International Journal of Antimicrobial Agents 6 (2020): 105952.
- Cheng L., et al. “Clonal dissemination of KPC-2 producing Klebsiella pneumoniae ST11 clone with high prevalence of oqxAB and rmtB in a tertiary hospital in China: results from a 3-year period”. Annals of Clinical Microbiology and Antimicrobials 15 (2016): 1.
- Wick RR., et al. “Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads”. PLoS Computational Biology 6 (2017): e1005595.
- Gardner SN., et al. “kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome”. Bioinformatics 17 (2015): 2877-2878.
- Felsenstein J. “Evolutionary trees from DNA sequences: a maximum likelihood approach”. Journal of Molecular Evolution 6 (1981): 368-376.
- Tenover FC., et al. “Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing”. Journal of Clinical Microbiology 9 (1995): 2233-2239.
- Khan SA., et al. “Intrathecal and intraventricular antibiotics for postoperative Gram-negative meningitis and ventriculitis”. Surgical Neurology International 8 (2017): 226.
- Bardak-Ozcem S and Sipahi OR. “An updated approach to healthcare-associated meningitis”. Expert Review of Anti-Infective Therapy 3 (2014): 333-342.
- Yang KC., et al. “Occult community acquired Klebsiella pneumoniae purulent meningitis in an adult: A case report”. Medicine 25 (2018): e11017.
- Patrial YC., et al. “Post-neurosurgical meningitis caused by KPC-producing Klebsiella pneumoniae: report of two cases”. Revista do Instituto de Medicina Tropical de Sao Paulo 61 (2019): e69.
- Mermer S., et al. “Carbapenem-resistant Klebsiella pneumoniae meningitis: A case report”. Journal of Chemotherphy 5 (2016): 454-455.
- Chen Y and Liu L. “The treatment of nosocomial meningitis and brain abscess by carbapenem-resistant Klebsiella pneumonia”. British Journal of Neurosurgery (2019): 1-3.
- Snitkin ES., et al. “Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing”. Science Translational Medicine 148 (2012): 148ra116.
- Fu P., et al. “Pandemic spread of blaKPC-2 among Klebsiella pneumoniae ST11 in China is associated with horizontal transfer mediated by IncFII-like plasmids”. International Journal of Antimicrobial Agents 2 (2019): 117-124.
- Chen L., et al. “Carbapenemase-producing Klebsiella pneumoniae: molecular and genetic decoding”. Trends in Microbiology 12 (2014): 686-696.
- Chen L., et al. “Complete sequence of a bla (KPC-2)-harboring IncFII (K1) plasmid from a Klebsiella pneumoniae sequence type 258 strain”. Antimicrobial Agents and Chemotherapy 3 (2013): 1542-1545.
- Shen P., et al. “Molecular dissection of blaKPC-2-bearing plasmids evolving in Klebsiella pneumoniae isolated at one teaching hospital in Shanghai, China”. FEMS Microbiology Letters 15 (2016): 1-5.
- Wang LH., et al. “Diversity of the Genetic Environment of the blaKPC-2 Gene Among Klebsiella pneumoniae Clinical Isolates in a Chinese Hospital”. Microbial Drug Resistance 1 (2016): 15-21.
- Gootz TD., et al. “Genetic organization of transposase regions surrounding blaKPC carbapenemase genes on plasmids from Klebsiella strains isolated in a New York City hospital”. Antimicrobial Agents and Chemotherapy 5 (2009): 1998-2004.
- Andrade LN., et al. “Dissemination of blaKPC-2 by the spread of Klebsiella pneumoniae clonal complex 258 clones (ST258, ST11, ST437) and plasmids (IncFII, IncN, IncL/M) among Enterobacteriaceae species in Brazil”. Antimicrobial Agents and Chemotherapy 7 (2011): 3579-3583.
- Kassis-Chikhani N., et al. “Complete nucleotide sequence of the first KPC-2- and SHV-12-encoding IncX plasmid, pKpS90, from Klebsiella pneumoniae”. Antimicrobial Agents and Chemotherapy 1 (2013): 618-620.
- Cuzon G., et al. “Worldwide diversity of Klebsiella pneumoniae that produce beta-lactamase blaKPC-2 gene”. Emerging Infectious Diseases 9 (2010): 1349-1356.
- Chi X., et al. “Genomic Analysis of A KPC-2-Producing Klebsiella Pneumoniae ST11 Outbreak from A Teaching Hospital In Shandong Province, China”. Infection and Drug Resistance 12 (2019): 2961-2969.
- Villa L., et al. “Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants”. The Journal of Antimicrobial Chemotherapy 12 (2010): 2518-2529.<
Citation
Copyright