Acta Scientific Microbiology

Review Article Volume 7 Issue 8

A Comprehensive Review on Approaches for SARS-CoV-2 Detection Kits - An Indian Scenario

Nilay Dave1 and Chetana Roat2*

1Research Scholar, Department of Biotechnology, Silver Oak Institute of Science, Silver Oak University, Gota, Ahmedabad, India
2Head of Biotechnology Department, Silver Oak Institute of Science, Silver Oak University, Gota, Ahmedabad, India

*Corresponding Author: Chetana Roat, Head of Biotechnology Department, Silver Oak Institute of Science, Silver Oak University, Gota, Ahmedabad, India.

Received: June 26, 2024; Published: July 29, 2024

Abstract

The global outbreak of SARS-CoV-2 virus has taken more than 6.3 million lives and the number is increasing at a constant pace. Different methods for diagnosis of the virus including sensitive techniques like RT-PCR and LAMP as well as quick and cost-effective techniques including antigen detection technique have been developed globally. India has played a strong character in terms of COVID research to manage the pandemic situation. The presented review focuses on various diagnostic approaches with available kits (RT-PCR, LAMP and Antigen detection) developed by India and approved by ICMR till late 2022. In detailed methods and principles of each technique have also been discussed. It also represents the Next Generation Sequencing (NGS) techniques utilized for understanding different variants of the virus. The article not only dictates the Indian scenario of COVID diagnosis but also explains the research gaps and future aspects of the same.

Keywords: SARS-CoV-2; Diagnostic Kit; RT-PCR; RT-LAMP; ICMR; Next Generation Sequencing

References

  1. Amaral C., et al. “A molecular test based on RT-LAMP for rapid, sensitive and inexpensive colorimetric detection of SARS-CoV-2 in clinical samples”. Scientific Reports 11 (2021): 16430.
  2. Bhoyar RC., et al. “High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing”. PLoS One 16 (2021): e0247115.
  3. Cousins S. “Bangladesh’s COVID-19 testing criticised”. Lancet 396 (2020): 591.
  4. Elbe S and Buckland-Merrett G. “Data, disease and diplomacy: GISAID’s innovative contribution to global health”. Global Challenges (Hoboken, NJ) 1 (2017): 33-46.
  5. Forbes JD., et al. “Metagenomics: The next culture-independent game changer”. Frontiers in Microbiology 8 (2017): 1069.
  6. Garg A., et al. “Evaluation of seven commercial RT-PCR kits for COVID-19 testing in pooled clinical specimens”. Journal of Medical Virology 93 (2021): 2281-2286.
  7. Garg N., et al. “Recent advances in loop-mediated isothermal amplification (LAMP) for rapid and efficient detection of pathogens”. Current Research in Microbial Sciences 3 (2022): 100120.
  8. Hufsky F., et al. “Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research”. Brief Bioinformation 22 (2021): 642-663.
  9. Koteswara Rao V. “Point of Care Diagnostic Devices for Rapid Detection of Novel Coronavirus (SARS-nCoV19) Pandemic: A Review”. Frontiers Nanotechnology 2 (2021): 22.
  10. Kubina R and Dziedzic A. “Molecular and Serological Tests for COVID-19. A Comparative Review of SARS-CoV-2 Coronavirus Laboratory and Point-of-Care Diagnostics”. Diagnostics 10 (2020).
  11. Lu R., et al. “Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding”. Lancet 395 (2020): 565-574.
  12. Notomi T., et al. “Loop-mediated isothermal amplification of DNA”. Nucleic Acids Research 28 (2000).
  13. Population, total - South Asia | Data [WWW Document], n.d. (2022).
  14. Procop GW., et al. “A Comparison of Five SARS-CoV-2 Molecular Assays With Clinical Correlations”. American Journal of Clinical Pathology 155 (2021): 69-78.
  15. Rockett RJ., et al. “Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modelling”. Nature Medicine 26 (2020): 1398-1404.
  16. Rossi GP., et al. “SARS-CoV-2 strategically mimics proteolytic activation of human ENaC”. elifesciences.org 9 (2020).
  17. Salman HM., et al. “An epidemiological, strategic and response analysis of the COVID-19 pandemic in South Asia: a population-based observational study”. BMC Public Health 22 (2022): 1-9.
  18. Shukla A., et al. “Curse of La Corona: unravelling the scientific and psychological conundrums of the 21st century pandemic”. Molecular Divers (2021).
  19. Srivastava S., et al. “SARS-CoV-2 genomics: An Indian perspective on sequencing viral variants” (2021).
  20. Udugama B., et al. “Diagnosing COVID-19: The Disease and Tools for Detection”. ACS Nano 14 (2020): 3822-3835.
  21. WHO Coronavirus (COVID-19) Dashboard | WHO Coronavirus (COVID-19) Dashboard With Vaccination Data [WWW Document], n.d. (2022).
  22. Yadav P., et al. “Full-genome sequences of the first two SARS-CoV-2 viruses from India”. Indian Journal of Medical Research 151 (2022): 200-209.
  23. Zhang YZ., et al. “A Genomic Perspective on the Origin and Emergence of SARS-CoV-2”. Cell 181 (2020): 223-227.
  24. Zheng J. “SARS-CoV-2: an Emerging Coronavirus that Causes a Global Threat”. International Journal of Biological Sciences (2020): 1678-1685.
  25. Zhou P., et al. “A pneumonia outbreak associated with a new coronavirus of probable bat origin”. Nature 579 (2020): 270-273.
  26. Zhu H., et al. “The novel coronavirus outbreak in Wuhan, China”. Global Health Research Policy 5 (2020): 1-3.

Citation

Citation: Nilay Dave and Chetana Roat. “A Comprehensive Review on Approaches for SARS-CoV-2 Detection Kits - An Indian Scenario".Acta Scientific Microbiology 7.8 (2024): 150-164.

Copyright

Copyright: © 2024 Nilay Dave and Chetana Roat. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.




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